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The impact of biodiesel and new generation biofuels on emissions from heavy-duty diesel engines was investigated using a California Air Resources Board (CARB) certified diesel fuel as a base fuel. This study was performed on two heavy-duty diesel engines, a 2006 engine and a diesel particle filter (DPF) equipped 2007 engine, on an engine dynamometer over four different test cycles. Emissions from soy-based and animal-based biodiesel, renewable diesel fuel, and gas-to-liquid (GTL) diesel fuel were evaluated at blend levels ranging from 5 to 100%. Consistent with previous studies, particulate matter (PM), hydrocarbons (HC), and carbon monoxide (CO) emissions generally showed increasing reductions with increasing biodiesel and renewable/GTL diesel fuel blend levels for the non-DPF equipped engine. The levels of these reductions were generally comparable to those found in previous studies performed using more typical Federal diesel fuels.